Publications

Publications 2012:
  • Diffusion and multiple orientations from 1.5 MR systems with limited gradient tables [PDF] Bibtex
    S. Merlet, R. Deriche, K. Whittingstall, and M. Descoteaux
    ISMRM 20th Annual Meeting (2012), Melbourne, Australia, 2012, pp. 1922.
    @InProceedings{    merlet-deriche-etal:12,
      author          = {Merlet, Sylvain and Deriche, Rachid and Whittingstall, Kevin and Descoteaux, Maxime},
      title            = {Diffusion and multiple orientations from 1.5 MR systems with limited gradient tables},
      pages            = {1922},
      booktitle          = {ISMRM 20th Annual Meeting (2012)},
      year            = {2012},
      address          = {Melbourne, Australia},
      month            = may,
      url            = {http://hal.archives-ouvertes.fr/hal-00712686},
      keywords          = {EAP; Diffusion MRI},
      topic            = {misc},
      owner            = {smerlet},
      group            = {Athena},
      x-proceedings          = {yes},
      x-international-audience    = {yes},
      hal_id          = {hal-00712686},
      x-pays          = {}
    }
    @InProceedings{    merlet-deriche-etal:12,
      author          = {Merlet, Sylvain and Deriche, Rachid and Whittingstall, Kevin and Descoteaux, Maxime},
      title            = {Diffusion and multiple orientations from 1.5 MR systems with limited gradient tables},
      pages            = {1922},
      booktitle          = {ISMRM 20th Annual Meeting (2012)},
      year            = {2012},
      address          = {Melbourne, Australia},
      month            = may,
      url            = {http://hal.archives-ouvertes.fr/hal-00712686},
      keywords          = {EAP; Diffusion MRI},
      topic            = {misc},
      owner            = {smerlet},
      group            = {Athena},
      x-proceedings          = {yes},
      x-international-audience    = {yes},
      hal_id          = {hal-00712686},
      x-pays          = {}
    }
  • Ensemble Average Propagator Reconstruction via Compressed Sensing: Discrete or Continuous Bases ? [PDF] Bibtex
    S. Merlet, M. Paquette, R. Deriche, and M. Descoteaux
    ISMRM 20th Annual Meeting (2012), Australia, 2012, pp. 2277.
    @InProceedings{    merlet-paquette-etal:12,
      author          = {Merlet, Sylvain and Paquette, Michael and Deriche, Rachid and Descoteaux, Maxime},
      title            = {Ensemble Average Propagator Reconstruction via Compressed Sensing: Discrete or Continuous Bases ?},
      pages            = {2277},
      booktitle          = {ISMRM 20th Annual Meeting (2012)},
      year            = {2012},
      address          = {Australia},
      month            = may,
      url            = {http://hal.archives-ouvertes.fr/hal-00712687},
      topic            = {misc},
      owner            = {smerlet},
      group            = {Athena},
      x-proceedings          = {yes},
      x-international-audience    = {yes},
      hal_id          = {hal-00712687},
      x-pays          = {}
    }
    @InProceedings{    merlet-paquette-etal:12,
      author          = {Merlet, Sylvain and Paquette, Michael and Deriche, Rachid and Descoteaux, Maxime},
      title            = {Ensemble Average Propagator Reconstruction via Compressed Sensing: Discrete or Continuous Bases ?},
      pages            = {2277},
      booktitle          = {ISMRM 20th Annual Meeting (2012)},
      year            = {2012},
      address          = {Australia},
      month            = may,
      url            = {http://hal.archives-ouvertes.fr/hal-00712687},
      topic            = {misc},
      owner            = {smerlet},
      group            = {Athena},
      x-proceedings          = {yes},
      x-international-audience    = {yes},
      hal_id          = {hal-00712687},
      x-pays          = {}
    }
  • Tractography via the Ensemble Average Propagator in diffusion MRI [PDF] Bibtex
    S. Merlet, A. Philippe, R. Deriche, and M. Descoteaux
    Lecture Notes in Computer Science series, Nice, France, 2012, pp. 7511.
    @InProceedings{    merlet-philippe-etal:12,
      author          = {Merlet, Sylvain and Philippe, Anne-Charlotte and Deriche, Rachid and Descoteaux, Maxime},
      title            = {Tractography via the Ensemble Average Propagator in diffusion MRI},
      pages            = {7511},
      booktitle          = {Lecture Notes in Computer Science series},
      year            = {2012},
      volume          = {7511},
      address          = {Nice, France},
      month            = oct,
      url            = {http://hal.archives-ouvertes.fr/hal-00727797},
      keywords          = {Diffusion MRI; Compressed sensing; Ensemble Average; Propagator recovery ; Propagator;
            Orientation Distribution Function; Spherical Polar Fourier},
      topic            = {misc},
      owner            = {smerlet},
      group            = {Athena},
      x-proceedings          = {yes},
      x-international-audience    = {yes},
      hal_id          = {hal-00727797},
      x-pays          = {}
    }
    @InProceedings{    merlet-philippe-etal:12,
      author          = {Merlet, Sylvain and Philippe, Anne-Charlotte and Deriche, Rachid and Descoteaux, Maxime},
      title            = {Tractography via the Ensemble Average Propagator in diffusion MRI},
      pages            = {7511},
      booktitle          = {Lecture Notes in Computer Science series},
      year            = {2012},
      volume          = {7511},
      address          = {Nice, France},
      month            = oct,
      url            = {http://hal.archives-ouvertes.fr/hal-00727797},
      keywords          = {Diffusion MRI; Compressed sensing; Ensemble Average; Propagator recovery ; Propagator;
            Orientation Distribution Function; Spherical Polar Fourier},
      topic            = {misc},
      owner            = {smerlet},
      group            = {Athena},
      x-proceedings          = {yes},
      x-international-audience    = {yes},
      hal_id          = {hal-00727797},
      x-pays          = {}
    }
  • The adjoint method of OpenMEEG for EEG and MEG with large source space [PDF] Bibtex
    E. Olivi, A. Gramfort, T. Papadopoulo, and M. Clerc
    Proceedings of Biomag, 2012.
    @Conference{    olivi-gramfort-etal:12,
      author          = {Emmanuel Olivi and Alexandre Gramfort and Théodore Papadopoulo and Maureen Clerc},
      title            = {The adjoint method of OpenMEEG for EEG and MEG with large source space},
      booktitle          = {Proceedings of Biomag},
      year            = {2012},
      url            = {ftp://ftp-sop.inria.fr/athena/Publications/2012/olivi-gramfort-etal:12.pdf},
      topic            = {misc},
      owner            = {papadop},
      group            = {Athena},
      x-proceedings          = {no},
      x-international-audience    = {yes},
      x-pays          = {}
    }
    @Conference{    olivi-gramfort-etal:12,
      author          = {Emmanuel Olivi and Alexandre Gramfort and Théodore Papadopoulo and Maureen Clerc},
      title            = {The adjoint method of OpenMEEG for EEG and MEG with large source space},
      booktitle          = {Proceedings of Biomag},
      year            = {2012},
      url            = {ftp://ftp-sop.inria.fr/athena/Publications/2012/olivi-gramfort-etal:12.pdf},
      topic            = {misc},
      owner            = {papadop},
      group            = {Athena},
      x-proceedings          = {no},
      x-international-audience    = {yes},
      x-pays          = {}
    }
  • Whole cortex parcellation combining analysis of MEG forward problem, structural connectivity and Brodmann atlas [PDF] Bibtex
    A. Philippe, M. Clerc, T. Papadopoulo, and R. Deriche
    Proceedings of Biomag, Paris, France, 2012.
    @Conference{    philippe-clerc-etal:12,
      author          = {Anne-Charlotte Philippe and Maureen Clerc and Théo[dore] Papadopoulo and Rachid Deriche},
      title            = {Whole cortex parcellation combining analysis of MEG forward problem, structural connectivity and Brodmann atlas},
      booktitle          = {Proceedings of Biomag},
      year            = {2012},
      address          = {Paris, France},
      month            = sep,
      url            = {http://hal.inria.fr/hal-00760042},
      topic            = {misc},
      owner            = {papadop},
      group            = {Athena},
      x-proceedings          = {no},
      x-international-audience    = {yes},
      hal_id          = {hal-00760042},
      x-pays          = {}
    }
    @Conference{    philippe-clerc-etal:12,
      author          = {Anne-Charlotte Philippe and Maureen Clerc and Théo[dore] Papadopoulo and Rachid Deriche},
      title            = {Whole cortex parcellation combining analysis of MEG forward problem, structural connectivity and Brodmann atlas},
      booktitle          = {Proceedings of Biomag},
      year            = {2012},
      address          = {Paris, France},
      month            = sep,
      url            = {http://hal.inria.fr/hal-00760042},
      topic            = {misc},
      owner            = {papadop},
      group            = {Athena},
      x-proceedings          = {no},
      x-international-audience    = {yes},
      hal_id          = {hal-00760042},
      x-pays          = {}
    }
  • A nested cortex parcellation combining analysis of MEG forward problem and diffusion MRI
    tractography
    Bibtex
    A. Philippe, M. Clerc, T. Papadopoulo, and R. Deriche
    IEEE International Symposium on Biomedical Imaging (ISBI), Barcelona, 2012, pp. 518–521.
    @InProceedings{    philippe-clerc-etal:12b,
      author          = {Philippe, Anne-Charlotte and Clerc, Maureen and Papadopoulo, Théo[dore] and Deriche, Rachid},
      title            = {A nested cortex parcellation combining analysis of MEG forward problem and diffusion MRI
            tractography},
      pages            = {518–521},
      booktitle          = {IEEE International Symposium on Biomedical Imaging (ISBI)},
      year            = {2012},
      address          = {Barcelona},
      month            = may,
      organization          = {IEEE},
      topic            = {misc},
      owner            = {papadop},
      group            = {Athena},
      x-proceedings          = {yes},
      x-international-audience    = {yes},
      x-pays          = {}
    }
    @InProceedings{    philippe-clerc-etal:12b,
      author          = {Philippe, Anne-Charlotte and Clerc, Maureen and Papadopoulo, Théo[dore] and Deriche, Rachid},
      title            = {A nested cortex parcellation combining analysis of MEG forward problem and diffusion MRI
            tractography},
      pages            = {518–521},
      booktitle          = {IEEE International Symposium on Biomedical Imaging (ISBI)},
      year            = {2012},
      address          = {Barcelona},
      month            = may,
      organization          = {IEEE},
      topic            = {misc},
      owner            = {papadop},
      group            = {Athena},
      x-proceedings          = {yes},
      x-international-audience    = {yes},
      x-pays          = {}
    }
  • dMRI tractography of WM fibers to recover the anatomical connectivity supporting a MEG
    epileptic network
    [PDF] Bibtex
    A. Philippe, M. Clerc, and R. Deriche
    SFRMBM, Marseille, France, 2012.
    @InProceedings{    philippe-clerc-etal:12c,
      author          = {Philippe, Anne-Charlotte and Clerc, Maureen and Deriche, Rachid},
      title            = {dMRI tractography of WM fibers to recover the anatomical connectivity supporting a MEG
            epileptic network},
      booktitle          = {SFRMBM},
      year            = {2012},
      address          = {Marseille, France},
      month            = mar,
      url            = {http://hal.inria.fr/hal-00760041},
      topic            = {misc},
      owner            = {papadop},
      group            = {Athena},
      x-proceedings          = {yes},
      x-international-audience    = {no},
      hal_id          = {hal-00760041},
      x-pays          = {}
    }
    @InProceedings{    philippe-clerc-etal:12c,
      author          = {Philippe, Anne-Charlotte and Clerc, Maureen and Deriche, Rachid},
      title            = {dMRI tractography of WM fibers to recover the anatomical connectivity supporting a MEG
            epileptic network},
      booktitle          = {SFRMBM},
      year            = {2012},
      address          = {Marseille, France},
      month            = mar,
      url            = {http://hal.inria.fr/hal-00760041},
      topic            = {misc},
      owner            = {papadop},
      group            = {Athena},
      x-proceedings          = {yes},
      x-international-audience    = {no},
      hal_id          = {hal-00760041},
      x-pays          = {}
    }
Publications 2013:
  • Cortex Parcellation Via Diffusion Data As Prior Knowledge for the Meg Inverse Problem [PDF] Bibtex
    A. Philippe, M. Clerc, T. Papadopoulo, and R. Deriche
    International Symposium on Biomedical Imaging: From Nano to Macro, San Francisco, CA, États-Unis, 2013.
    @InProceedings{    philippe-clerc-etal:13,
      author          = {Philippe, Anne-Charlotte and Clerc, Maureen and Papadopoulo, Théodore and Deriche, Rachid},
      title            = {Cortex Parcellation Via Diffusion Data As Prior Knowledge for the Meg Inverse Problem},
      booktitle          = {International Symposium on Biomedical Imaging: From Nano to Macro},
      year            = {2013},
      address          = {San Francisco, CA, États-Unis},
      month            = apr,
      url            = {http://hal.inria.fr/hal-00808056},
      topic            = {misc},
      owner            = {papadop},
      group            = {Athena},
      x-proceedings          = {yes},
      x-international-audience    = {yes},
      x-pays          = {}
    }
    @InProceedings{    philippe-clerc-etal:13,
      author          = {Philippe, Anne-Charlotte and Clerc, Maureen and Papadopoulo, Théodore and Deriche, Rachid},
      title            = {Cortex Parcellation Via Diffusion Data As Prior Knowledge for the Meg Inverse Problem},
      booktitle          = {International Symposium on Biomedical Imaging: From Nano to Macro},
      year            = {2013},
      address          = {San Francisco, CA, États-Unis},
      month            = apr,
      url            = {http://hal.inria.fr/hal-00808056},
      topic            = {misc},
      owner            = {papadop},
      group            = {Athena},
      x-proceedings          = {yes},
      x-international-audience    = {yes},
      x-pays          = {}
    }
  • Diffusion MRI & Compressive Sensing Bibtex
    S. Merlet
    PhD Thesis, 2013.
    @PhDThesis{    merlet:13,
      author          = {Merlet, Sylvain},
      title            = {Diffusion MRI \& Compressive Sensing},
      school          = {Nice Sophia Antipolis University},
      year            = {2013},
      month            = sep,
      topic            = {misc},
      owner            = {der},
      group            = {Athena},
      x-pays          = {}
    }
    @PhDThesis{    merlet:13,
      author          = {Merlet, Sylvain},
      title            = {Diffusion MRI \& Compressive Sensing},
      school          = {Nice Sophia Antipolis University},
      year            = {2013},
      month            = sep,
      topic            = {misc},
      owner            = {der},
      group            = {Athena},
      x-pays          = {}
    }
  • Compressive Sensing DSI Bibtex
    S. Merlet, M. Paquette, R. Deriche, and M. Descoteaux
    Proceeding of: ISBI HARDI Reconstruction Challenge, 2013, pp. 10.
    @InProceedings{    merlet-paquette-etal:13,
      author          = {Merlet, S. and Paquette, M. and Deriche, R. and Descoteaux, M.},
      title            = {Compressive Sensing DSI},
      pages            = {10},
      booktitle          = {Proceeding of: ISBI HARDI Reconstruction Challenge},
      year            = {2013},
      topic            = {misc},
      owner            = {papadop},
      group            = {Athena},
      x-proceedings          = {yes},
      x-international-audience    = {yes},
      x-pays          = {}
    }
    @InProceedings{    merlet-paquette-etal:13,
      author          = {Merlet, S. and Paquette, M. and Deriche, R. and Descoteaux, M.},
      title            = {Compressive Sensing DSI},
      pages            = {10},
      booktitle          = {Proceeding of: ISBI HARDI Reconstruction Challenge},
      year            = {2013},
      topic            = {misc},
      owner            = {papadop},
      group            = {Athena},
      x-proceedings          = {yes},
      x-international-audience    = {yes},
      x-pays          = {}
    }
  • Propagation of epileptic spikes revealed by diffusion-based constrained MEG source reconstruction Bibtex
    A. -C. Philippe, T. Papadopoulo, M. Clerc, and R. Deriche
    Scale-free Dynamics and Networks in Neuroscience, 2013.
    @Conference{    philippe-papadopoulo-etal:13,
      author          = {Philippe, A.-C. and Papadopoulo, T. and Clerc, M. and Deriche, R.},
      title            = {Propagation of epileptic spikes revealed by diffusion-based constrained MEG source reconstruction},
      booktitle          = {Scale-free Dynamics and Networks in Neuroscience},
      year            = {2013},
      topic            = {misc},
      owner            = {papadop},
      group            = {Athena},
      x-proceedings          = {no},
      x-international-audience    = {yes},
      x-pays          = {}
    }
    @Conference{    philippe-papadopoulo-etal:13,
      author          = {Philippe, A.-C. and Papadopoulo, T. and Clerc, M. and Deriche, R.},
      title            = {Propagation of epileptic spikes revealed by diffusion-based constrained MEG source reconstruction},
      booktitle          = {Scale-free Dynamics and Networks in Neuroscience},
      year            = {2013},
      topic            = {misc},
      owner            = {papadop},
      group            = {Athena},
      x-proceedings          = {no},
      x-international-audience    = {yes},
      x-pays          = {}
    }
  • Quantitative comparison of reconstruction methods for intra-voxel fiber recovery from diffusion
    MRI
    [PDF] [DOI] Bibtex
    A. Daducci, E. Canales-Rodriguez, M. Descoteaux, Y. Gur, M. Mani, S. Merlet, A. Ramirez-Manzanares, P. R. Rodrigues, M. Reisert, F. Sepehrband, M. Paquette, E. Garyfallidis, Y. C. Ying-Chia, G. Menegaz, M. Jacob, E. Caruyer, R. Deriche, J. Choupan, V. Prckovska, M. Rivera, Y. Wiaux, and J. -P. Thiran
    ,” IEEE Transactions on Medical Imaging, vol. PP, iss. 99, pp. 1–1, 2013.
    @Article{    daducci-canales-rodriguez-etal:13b,
      author          = {Daducci, A. and Canales-Rodriguez, E. and Descoteaux, M. and Gur, Y. and Mani, M. and Merlet,
            S. and Ramirez-Manzanares, A. and Rodrigues, P.R. and Reisert, M. and Sepehrband, F. and
            Paquette, M. and Garyfallidis, E. and Ying-Chia, Y.C. and Menegaz, G. and Jacob, M. and Caruyer,
            E. and Deriche, R. and Choupan, J. and Prckovska, V. and Rivera, M. and Wiaux, Y. and Thiran,
            J.-P.},
      title            = {Quantitative comparison of reconstruction methods for intra-voxel fiber recovery from diffusion
            MRI},
      journal          = {IEEE Transactions on Medical Imaging},
      year            = {2013},
      volume          = {PP},
      number          = {99},
      pages            = {1–1},
      url            = {http://ieeexplore.ieee.org/xpl/articleDetails.jsp?reload=true&tp=&arnumber=6630106&queryText%3DQuantitative+comparison+of+reconstruction+methods+for+intra-voxel+fiber+recovery+from+diffusion+MRI}
            ,
      keywords          = {Diffusion tensor imaging;Educational institutions;Image reconstruction;Reconstruction
            algorithms;Sociology;Statistics;diffusion MRI;local reconstruction;quantitative
            comparison;synthetic data;validation},
      topic            = {misc},
      isbn            = {0278-0062},
      owner            = {papadop},
      group            = {Athena},
      x-editorial-board        = {yes},
      x-international-audience    = {yes},
      doi            = {10.1109/TMI.2013.2285500},
      x-pays          = {CA}
    }
    @Article{    daducci-canales-rodriguez-etal:13b,
      author          = {Daducci, A. and Canales-Rodriguez, E. and Descoteaux, M. and Gur, Y. and Mani, M. and Merlet,
            S. and Ramirez-Manzanares, A. and Rodrigues, P.R. and Reisert, M. and Sepehrband, F. and
            Paquette, M. and Garyfallidis, E. and Ying-Chia, Y.C. and Menegaz, G. and Jacob, M. and Caruyer,
            E. and Deriche, R. and Choupan, J. and Prckovska, V. and Rivera, M. and Wiaux, Y. and Thiran,
            J.-P.},
      title            = {Quantitative comparison of reconstruction methods for intra-voxel fiber recovery from diffusion
            MRI},
      journal          = {IEEE Transactions on Medical Imaging},
      year            = {2013},
      volume          = {PP},
      number          = {99},
      pages            = {1–1},
      url            = {http://ieeexplore.ieee.org/xpl/articleDetails.jsp?reload=true&tp=&arnumber=6630106&queryText%3DQuantitative+comparison+of+reconstruction+methods+for+intra-voxel+fiber+recovery+from+diffusion+MRI}
            ,
      keywords          = {Diffusion tensor imaging;Educational institutions;Image reconstruction;Reconstruction
            algorithms;Sociology;Statistics;diffusion MRI;local reconstruction;quantitative
            comparison;synthetic data;validation},
      topic            = {misc},
      isbn            = {0278-0062},
      owner            = {papadop},
      group            = {Athena},
      x-editorial-board        = {yes},
      x-international-audience    = {yes},
      doi            = {10.1109/TMI.2013.2285500},
      x-pays          = {CA}
    }
To appear:
  • Régularisation du problème inverse MEG par IRM de Diffusion Bibtex
    A. Philippe
    PhD Thesis, 2013.
    @PhDThesis{    philippe:13,
      author          = {Anne-Charlotte Philippe},
      title            = {Régularisation du problème inverse MEG par IRM de Diffusion},
      school          = {Université de Nice – Sophia Antipolis},
      year            = {2013},
      topic            = {misc},
      owner            = {papadop},
      group            = {Athena},
      x-pays          = {}
    }
    @PhDThesis{    philippe:13,
      author          = {Anne-Charlotte Philippe},
      title            = {Régularisation du problème inverse MEG par IRM de Diffusion},
      school          = {Université de Nice – Sophia Antipolis},
      year            = {2013},
      topic            = {misc},
      owner            = {papadop},
      group            = {Athena},
      x-pays          = {}
    }
Presentations:
Théo Papadopoulo presented the activities of BrainConnectivities at INRIA scientific meeting (June 26th, 2013).